/[genomes]/quickload/H_sapiens_Dec_2013/annots.xml
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revision 158 by nfreese, Wed Sep 22 20:46:16 2021 UTC revision 207 by aloraine, Wed Jan 8 15:28:47 2025 UTC
# Line 10  Line 10 
10          background="FFFFFF"          background="FFFFFF"
11          load_hint="Whole Sequence"          load_hint="Whole Sequence"
12          show2tracks="true"          show2tracks="true"
13    />     />
14      <file name="chess3.0.GRCh38.p12.bed.gz"
15            title="CHESS gene models v.3.0"
16            description="Based on nearly 10,000 GTEx project RNA-Seq experiments re-formatted for IGB from chess3.0.gff.gz"
17            url="https://github.com/chess-genome/chess"
18            direction_type="arrow"
19            name_size="14"
20            label_field="id"
21            background="FFFFFF"
22            foreground="000000"
23            show2tracks="true"
24       />
25    <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"    <file name="H_sapiens_Dec_2013_snp153Common.bed.gz"
26          title="Genetics/Common SNPs (153)"          title="Genetics/Common SNPs (153)"
27          description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"          description="Data from UCSC Table Browser - common SNPs (snp153Common table) - updated Sep 30, 2020"
# Line 21  Line 32 
32          background="FFFFFF"          background="FFFFFF"
33          foreground="1B4C9B"          foreground="1B4C9B"
34          show2tracks="false"          show2tracks="false"
35        />
36        <file name="https://data.bioviz.org/genomeseq/H_sapiens_Dec_2013/M1YNF4X1J.cram"
37            index="https://data.bioviz.org/genomeseq/H_sapiens_Dec_2013/M1YNF4X1J.cram.crai"
38            title="Genetics/Individual/Donor 1 M1YNF4X1J"
39            description="Donor 1 whole genome sequencing read alignment results from Nebula Genomics"
40            direction_type="none"
41            name_size="14"
42            max_depth="10"
43            background="FFFFFF"
44            foreground="1B4C9B"
45            show2tracks="false"
46        />
47        <file name="https://data.bioviz.org/genomeseq/unknown_reference/SQ867JX4-30x-WGS-Sequencing_com-12-25-24.bam"
48            index="https://data.bioviz.org/genomeseq/unknown_reference/SQ867JX4-30x-WGS-Sequencing_com-12-25-24.bam.bai"
49            title="Genetics/Individual/Donor 1 SQ867JX4"
50            description="Donor 1 whole genome sequencing read alignment results from Sequencing.com"
51            direction_type="none"
52            name_size="14"
53            max_depth="10"
54            background="FFFFFF"
55            foreground="1B4C9B"
56            show2tracks="false"
57       />
58      <file name="https://e4d05c260dbc25ea5821e03eb009a2b7-26238.collections.ac2it.arvadosapi.com/_/NB72462M.cram"
59            index="https://data.cyverse.org/dav-anon/iplant/home/nowlanf/cram/index/NB72462M.cram.crai"
60            title="Genetics/Individual/NB72462M - Personal Genome Project"
61            description="Whole genome sequencing read alignments from participant huF7A4DE file NB72462M.cram"
62            direction_type="none"
63            name_size="14"
64            max_depth="10"
65            background="FFFFFF"
66            foreground="1B4C9B"
67            show2tracks="false"
68            url="https://my.pgp-hms.org/profile/huF7A4DE"
69     />     />
70    <file name="H_sapiens_Dec_2013_all_est.psl.gz"    <file name="H_sapiens_Dec_2013_all_est.psl.gz"
71          title="UCSC Tracks/mRNA and EST/All human EST"          title="UCSC Tracks/mRNA and EST/All human EST"
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